| Identification |
|---|
| HMDB Protein ID
| CDBP03146 |
| Secondary Accession Numbers
| Not Available |
| Name
| Protocadherin-9 |
| Description
| Not Available |
| Synonyms
|
Not Available
|
| Gene Name
| PCDH9 |
| Protein Type
| Metal Binding |
| Biological Properties |
|---|
| General Function
| Involved in calcium ion binding |
| Specific Function
| Potential calcium-dependent cell-adhesion protein |
| GO Classification
|
| Component |
| membrane |
| cell part |
| plasma membrane |
| Function |
| ion binding |
| cation binding |
| metal ion binding |
| binding |
| calcium ion binding |
| Process |
| cell adhesion |
| cellular process |
| cell-cell adhesion |
| homophilic cell adhesion |
|
| Cellular Location
|
- Cell membrane
- Single-pass type I membrane protein
|
| Pathways
|
Not Available
|
| Gene Properties |
|---|
| Chromosome Location
| Chromosome:1 |
| Locus
| 13q21.32 |
| SNPs
| PCDH9 |
| Gene Sequence
|
>3714 bp
ATGGACCTGAGGGATTTTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCC
GCAATAGCTCAAGAACTTATTTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATA
GGAAACATACCAAAGGATCTGAACATTTCTCACATCAATGCTGCCACAGGGACCAGCGCC
AGCCTTGTCTACAGACTGGTTTCTAAAGCTGGGGATGCCCCTTTGGTGAAAGTTTCCAGC
AGCACTGGGGAAATTTTCACAACCTCCAACAGAATAGACAGAGAAAAACTCTGTGCTGGC
GCCTCATATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGTGATCCTCCCCAAT
GATTTCTTCAGGCTGATCAAAATAAAAATAATTGTCAAGGATACCAATGATAATGCCCCC
ATGTTTCCATCTCCTGTCATCAATATTTCCATTCCAGAAAACACTTTGATCAACAGCCGC
TTTCCAATTCCATCAGCAACAGATCCTGACACAGGCTTCAATGGTGTACAGCATTATGAA
TTGTTAAATGGGCAGAGTGTTTTTGGACTGGATATCGTGGAAACTCCAGAGGGAGAGAAG
TGGCCACAACTGATTGTTCAGCAAAACTTGGATAGAGAACAGAAAGATACCTATGTGATG
AAAATCAAAGTAGAGGATGGAGGCACTCCACAGAAATCCAGTACGGCCATACTGCAGGTC
ACAGTAAGTGATGTAAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAGGTGCAT
ATTCCAGAGAATGCTCCCGTAGGTACCTCTGTAATTCAGCTCCATGCCACTGATGCAGAT
ATAGGCAGTAATGCTGAAATCCGGTACATTTTTGGTGCCCAGGTCGCCCCTGCAACCAAA
AGACTCTTTGCTTTAAATAATACTACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGA
GAGGAGACAGCCATTCACAAAGTGACAGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCT
CGAGCAACGGTTACCATCAATGTCACCGATGTAAATGATAACCCTCCTAATATAGACCTC
AGGTACATTATAAGTCCCATCAATGGCACCGTGTATTTATCTGAGAAAGATCCTGTCAAT
ACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACAGATGTGAATGGCAAAGTGATC
TGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCGGTATATGACAACCAATATTTG
TTAGAGACCTCTTCTTTGTTGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTT
GCCTCTGATTCTGGGAAGCCCAGTTTAAATCAGACTGCCCTGGTAAGGGTTAAGCTTGAG
GATGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAA
AACAACCGACGTGGGTTATACTTAACAACTATTAGTGCCACAGATGAAGACAGTGGGAAA
AATGCAGACATTGTTTATCAGCTTGGACCGAATGCCTCCTTCTTTGATCTGGACCGAAAA
ACAGGAGTTTTGACAGCCTCCAGAGTATTTGACAGAGAAGAACAAGAACGATTCATTTTT
ACAGTAACTGCCAGGGACAATGGGACCCCTCCCCTCCAAAGCCAAGCGGCTGTGATTGTT
ACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCATTTTCAATTTTTT
GTGTCTGAGAATCTGCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGATGCAGAT
GCTGGAGAGAATAAAGCTGTGACTCTTTCCATTCTAAATGACAATGATAATTTTGTGTTG
GATCCCTATTCTGGAGTCATAAAGTCAAATGTCTCATTTGATAGAGAGCAGCAGAGTTCC
TACACTTTTGATGTCAAAGCCACTGATGGAGGACAACCACCTCGTTCCTCTACTGCAAAA
GTAACTATCAACGTCATGGATGTCAATGACAACAGCCCAGTTGTCATTTCTCCACCGTCT
AATACTTCCTTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGCTCCGTGGTAGCAGAAGTT
TTTGCAGTGGATGTTGACACTGGAATGAACGCTGAACTAAAGTATACTATAGTGAGTGGA
AACAATAAAGGCTTATTCCGGATTGATCCAGTAACAGGTAACATTACTCTGGAAGAAAAA
CCAGCACCTACTGATGTGGGATTGCATCGTTTGGTGGTCAACATAAGTGACCTGGGGTAC
CCTAAGTCTTTGCACACGCTTGTGCTTGTATTCCTTTATGTTAACGACACTGCTGGAAAT
GCCTCCTATATCTATGACTTGATCCGCAGGACTATGGAGACCCCGTTGGACAGGAACATA
GGGGATAGTAGCCAACCCTATCAAAATGAGGACTATCTAACCATCATGATTGCCATCATC
GCCGGTGCCATGGTGGTCATTGTTGTGATCTTCGTCACCGTTCTGGTGCGCTGTCGCCAT
GCATCAAGGTTCAAAGCAGCTCAGAGGAGCAAGCAAGGTGCCGAATGGATGTCCCCAAAC
CAGGAGAACAAGCAAAACAAGAAAAAGAAAAGAAAGAAAAGGAAGTCTCCCAAAAGCTCT
CTTTTGAACTTTGTTACTATCGAAGAGTCCAAACCCGATGATGCAGTTCATGAACCTATC
AATGGGACAATAAGCCTGCCGGCTGAACTGGAGGAGCAAAGTATAGGAAGATTTGACTGG
GGCCCGGCACCTCCAACAACATTCAAGCCTAACAGTCCTGACCTGGCCAAGCACTACAAA
TCTGCTTCTCCACAGCCTGCTTTTCATCTCAAACCAGACACTCCAGTTTCCGTGAAAAAG
CACCACGTGATTCAGGAACTCCCTTTGGACAACACCTTTGTTGGGGGTTGTGACACCCTT
TCTAAACGCTCTTCCACTAGTTCAGATCACTTCAGTGCCTCAGAGTGCAGTTCCCAAGGA
GGCTTCAAGACAAAGGGCCCCTTACACACCAGACAGTGTAACTCACACAGCAAAAGTGAC
AATATTCCTGTCACTCCTCAGAAATGTCCCAGCTCCACGGGTTTCCACATTCAGGAGAAT
GAAGAAAGCCATTACGAGTCGCAGCGCCGTGTTACGTTTCATCTCCCTGATGGCTCCCAG
GAAAGCTGCAGTGACAGTGGTCTAGGAGACCATGAGCCGGTGGGTAGTGGAACCCTGATC
TCACACCCTCTTCCTCTGGTTCAGCCACAGGACGAATTCTATGACCAGGCCTCTCCGGAC
AAGAGGACTGAAGCAGATGGCAACTCTGATCCCAACTCTGATGGGCCTTTGGGTCCCCGA
GGATTAGCTGAAGCTACAGAGATGTGCACTCAAGAGTGCTTGGTTTTGGGTCACTCTGAT
AATTGCTGGATGCCTCCTGGCTTGGGTCCATATCAACACCCCAAATCTCCTCTCTCAACC
TTTGCACCCCAGAAAGAATGGGTGAAGAAGGACAAGCTTGTGAATGGGCACACCCTGACC
AGAGCCTGGAAAGAAGACAGCAACAGGAACCAGTTCAATGACCGTAAGCAGTATGGCTCC
AATGAAGGCCATTTCAACAATGGCAGCCACATGACAGACATTCCTCTGGCAAATCTGAAG
TCTTATAAGCAAGCAGGAGGTGCTACTGAGAGTCCTAAGGAGCACCAACTCTAA
|
| Protein Properties |
|---|
| Number of Residues
| 1237 |
| Molecular Weight
| 136063.3 |
| Theoretical pI
| 5.12 |
| Pfam Domain Function
|
|
| Signals
|
|
|
Transmembrane Regions
|
|
| Protein Sequence
|
>Protocadherin-9
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
NIPVTPQKCPSSTGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
|
| External Links |
|---|
| GenBank ID Protein
| 45243534 |
| UniProtKB/Swiss-Prot ID
| Q9HC56 |
| UniProtKB/Swiss-Prot Entry Name
| PCDH9_HUMAN |
| PDB IDs
|
Not Available |
| GenBank Gene ID
| NM_203487.2 |
| GeneCard ID
| PCDH9 |
| GenAtlas ID
| PCDH9 |
| HGNC ID
| HGNC:8661 |
| References |
|---|
| General References
| Not Available |