Identification
HMDB Protein ID CDBP03141
Secondary Accession Numbers Not Available
Name Protocadherin gamma-B6
Description Not Available
Synonyms
  1. PCDH-gamma-B6
Gene Name PCDHGB6
Protein Type Metal Binding
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain
GO Classification
Component
membrane
cell part
plasma membrane
Function
metal ion binding
binding
calcium ion binding
ion binding
cation binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass type I membrane protein
Pathways
Gene Properties
Chromosome Location Chromosome:5
Locus 5q31
SNPs PCDHGB6
Gene Sequence
>2793 bp
ATGGGAGGGAGCTGCGCGCAGAGGCGCCGGGCCGGCCCGCGGCAGGTGCTATTTCCTTTG
CTGCTGCCTTTGTTCTACCCCACCCTGAGTGAGCCGATCCGCTACTCGATTCCGGAGGAG
CTGGCCAAGGGCTCGGTGGTGGGGAACCTCGCTAAGGATCTAGGGCTCAGTGTCCTGGAT
GTGTCGGCTCGCAAGCTGCGAGTGAGCGCGGAGAAGCTGCACTTCAGCGTAGACGCGGAG
AGCGGGGACTTACTTGTGAAGAACCGAATAGACCGTGAGCAAATATGCAAAGAGAGAAGA
AGATGTGAGTTGCAATTGGAAGCTGTGGTGGAAAATCCTTTAAATATTTTTCATGTCATT
GTGGTGATTGAGGATGTTAATGACCACGCCCCTCAATTTGATAAAAAGGAAATACATTTA
GAAATTTTCGAATCTGCATCCGCTGGTACACGACTATCGCTTGACCCTGCCACGGATCCT
GATATAAACATAAACTCAATTAAAGATTATAAGATAAACTCTAATCCTTATTTTTCATTA
ATGGTTAGAGTTAATTCCGATGGTGGCAAATACCCAGAGTTATCTCTGGAGAAACTCCTA
GACCGGGAAGAACAGAGATCTCATAGCTTGATATTGACTGCCTTGGACGGAGGGGACCCA
CCAAGAAGTGCCACCGCTCACATAGAAATTTCTGTCAAGGATACCAATGATAACCCCCCG
GTTTTCAGCAGAGACGAATATAGAATTAGTCTTAGTGAAAATCTGCCCCCTGGGTCCCCT
GTGTTGCAAGTGACAGCCACTGACCAGGATGAGGGGGTCAATGCTGAGATAAACTACTAC
TTCCGAAGCACTGCCCAGAGCACAAAACATATGTTCTCATTGGATGAGAAAACAGGTATG
ATTAAGAATAACCAGTCATTTGATTTTGAAGATGTAGAAAGGTACACCATGGAAGTGGAA
GCGAAGGACGGAGGTGGTCTCTCTACCCAGTGTAAAGTAATCATAGAAATCCTTGATGAA
AACGACAACAGCCCAGAAATAATCATCACTTCTCTCTCTGATCAGATTTTGGAGAATTCA
CCTCCAGGAATGGTTGTTGCCCTCTTCAAAACACGGGATCTGGATTTCGGAGGAAATGGA
GAAGTCAGGTGTAATATAGAAACAGACATTCCATTCAAGATTTATTCTTCTTCCAATAAC
TACTACAAACTGGTGACAGATGGAGCCCTGGACCGAGAGCAGACACCAGAATACAATGTC
ACCATCGTAGCCACTGACAGGGGCAAGCCGCCTCTTTCTTCCAGTAGAAGCATCACCTTG
TATGTCGCTGACATCAACGACAACGCCCCAGTTTTCGACCAGACGTCCTACGTGGTCCAC
GTGGCCGAGAACAACCCGCCAGGAGCCTCCATTGCGCAAGTGAGCGCCTCTGACCCGGAT
TTGGGGCTCAATGGCCACATCTCCTACTCTATAGTGGCGAGTGACCTAGAGCCCCTGGCG
GTGTCGTCATACGTGTCAGTGAGCGCGCAGAGCGGGGTGGTGTTCGCGCAGCGCGCCTTT
GATCACGAGCAGCTGCGCGCCTTCGCGCTCACGCTGCAGGCCCGCGACCACGGCTCGCCC
ACGCTCAGCGCCAACGTGAGCCTGCGCGTGTTGGTGGGAGACCGCAATGACAACGCACCG
CGGGTGCTGTACCCAGCTCTGGGTCCTGACGGCTCCGCGTTCTTCGATATGGTACCTCGC
TCTGCAGAGCCCGGCTACCTAGTGACTAAGGTGGTAGCGGTGGACGCCGACTCGGGACAC
AACGCCTGGCTGTCCTACCACGTGCTGCAGGCCAGTGAGCCCGGACTCTTCAGCCTGGGG
CTGCGCACTGGGGAGGTGCGCACGGCTCGAGCCTTAGGCGACAGGGACGCAGCCCGCCAG
CGCCTGCTGGTCGCTGTGCGTGACGGTGGACAGCCGCCACTCTCTGCCACCGCCACGCTT
CATCTGGTCTTCGCAGACAACTTGCAAGAGATACTGCCAGACCTCAGCGACCGCCCTGTA
CTCTCTGACCCCCAGGCTGAACTGCAGTTTTACCTGGTGGTGGCCTTGGCCTTAATCTCA
GTGCTCTTCCTCCTCGCCGTGATTCTGGCCATTGCCTTGCGCCTGCGACGCTCTCTCAGC
CCTGCTACTTGGGACTGCTTCCATCCTGGTCTCTGTGTCAAGTCTGGACCTGTAGTTCCC
CCCAACTACAGTGAGGGGACTTTGCCTTATTCTTATAATCTGTGCATTGCACATACGGGT
ACAAAAGAGTTTAATTTCCTAAAATGCAGTGTGCCCCTACATTCCAATGAAGACATGGTT
TGCAGTGTTTCTCCTGGAGCCTTAATTCCACCTCATGGTGGGGAGGATTTGACTTCACAT
CCTGAGACTCTGACTTCGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAG
AGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAG
TTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGG
AGCTCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAG
TTCACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCC
ACACTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAAC
AAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA
Protein Properties
Number of Residues 930
Molecular Weight 101042.4
Theoretical pI 4.89
Pfam Domain Function
Signals
  • ["1-30"]
Transmembrane Regions
  • ["692-712"]
Protein Sequence
>Protocadherin gamma-B6
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLD
VSARKLRVSAEKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVI
VVIEDVNDHAPQFDKKEIHLEIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSL
MVRVNSDGGKYPELSLEKLLDREEQRSHSLILTALDGGDPPRSATAHIEISVKDTNDNPP
VFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYYFRSTAQSTKHMFSLDEKTGM
IKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIITSLSDQILENS
PPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV
TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPD
LGLNGHISYSIVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSP
TLSANVSLRVLVGDRNDNAPRVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGH
NAWLSYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATL
HLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALISVLFLLAVILAIALRLRRSLS
PATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCSVPLHSNEDMV
CSVSPGALIPPHGGEDLTSHPETLTSQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQ
FDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNA
TLTNAAGKRDGKAPAGGNGNKKKSGKKEKK
GenBank ID Protein 5456973
UniProtKB/Swiss-Prot ID Q9Y5F9
UniProtKB/Swiss-Prot Entry Name PCDGI_HUMAN
PDB IDs Not Available
GenBank Gene ID AF152335
GeneCard ID PCDHGB6
GenAtlas ID PCDHGB6
HGNC ID HGNC:8713
References
General References Not Available