Record Information
Version1.0
Created at2020-03-18 23:21:37 UTC
Updated at2020-11-18 16:34:36 UTC
CannabisDB IDCDB006144
Secondary Accession NumbersNot Available
Cannabis Compound Identification
Common NameIsocitric acid
DescriptionIsocitric Acid, also known as isocitrate, belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups. Isocitric acid is a structural isomer of citric acid and is mildly acidic (based on its pKa). Isocitric acid exists in all living species, ranging from bacteria to humans. It is formed from citrate with the help of the enzyme aconitase and is transformed to alpha-ketoglutarate by isocitrate dehydrogenase. Outside of the human body, isocitric acid has been detected, but not quantified in, several different foods, such as red currants, wild celeries, gooseberries, soursops, and apples. This could make isocitric acid a potential biomarker for the consumption of these foods. Salts and esters of isocitric acid are known as isocitrates. In authentic orange juice, for example, the ratio of citric acid to D-isocitric acid is usually less than 130. As a result, isocitric acid is commonly used as a marker to detect the authenticity and quality of fruit products, most often citrus juices.
Structure
Thumb
Synonyms
ValueSource
D-Erythro-isocitric acidKegg
D-Erythro-isocitrateGenerator
IsocitrateGenerator
Chemical FormulaC6H8O7
Average Molecular Weight192.12
Monoisotopic Molecular Weight192.027
IUPAC Name(1S,2S)-1-hydroxypropane-1,2,3-tricarboxylic acid
Traditional NameD-erythro-isocitric acid
CAS Registry Number30810-51-6
SMILES
O[C@@H]([C@H](CC(O)=O)C(O)=O)C(O)=O
InChI Identifier
InChI=1S/C6H8O7/c7-3(8)1-2(5(10)11)4(9)6(12)13/h2,4,9H,1H2,(H,7,8)(H,10,11)(H,12,13)/t2-,4-/m0/s1
InChI KeyODBLHEXUDAPZAU-OKKQSCSOSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tricarboxylic acids and derivatives. These are carboxylic acids containing exactly three carboxyl groups.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassCarboxylic acids and derivatives
Sub ClassTricarboxylic acids and derivatives
Direct ParentTricarboxylic acids and derivatives
Alternative Parents
Substituents
  • Tricarboxylic acid or derivatives
  • Beta-hydroxy acid
  • Monosaccharide
  • Hydroxy acid
  • Alpha-hydroxy acid
  • Secondary alcohol
  • Carboxylic acid
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Not Available
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting Point105 °CWikipedia
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
logPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP-0.35ALOGPS
logP-1.4ChemAxon
logS-0.56ALOGPS
pKa (Strongest Acidic)3.07ChemAxon
pKa (Strongest Basic)-4ChemAxon
Physiological Charge-3ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area132.13 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity35.72 m³·mol⁻¹ChemAxon
Polarizability15.5 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Spectra
EI-MS/GC-MS
TypeDescriptionSplash KeyView
Predicted GC-MSIsocitric acid, non-derivatized, Predicted GC-MS Spectrum - 70eV, Positivesplash10-00ba-7900000000-96194d87d52b155cf1b9Spectrum
MS/MS
TypeDescriptionSplash KeyView
Predicted MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-004j-0900000000-a75a4b486df1552d6d932017-07-25View Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0gla-4900000000-d04fec4218cafd6195df2017-07-25View Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0fk9-8900000000-4e5fbbb415df9fbc8f312017-07-25View Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-00ke-1900000000-c364bae4640e201c366d2017-07-26View Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-0v4j-4900000000-d00f263a75673b7981c72017-07-26View Spectrum
Predicted MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0pk9-9200000000-156693398229f972d7172017-07-26View Spectrum
NMRNot Available
Pathways
Pathways
Protein Targets
Enzymes
Protein NameGene NameLocusUniprot IDDetails
Cytoplasmic aconitate hydrataseACO19p21.1P21399 details
TransportersNot Available
Metal Bindings
Protein NameGene NameLocusUniprot IDDetails
Cytoplasmic aconitate hydrataseACO19p21.1P21399 details
ReceptorsNot Available
Transcriptional FactorsNot Available
Concentrations Data
Not Available
HMDB IDNot Available
DrugBank IDDB01727
Phenol Explorer Compound IDNot Available
FoodDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDC04617
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkIsocitric acid
METLIN IDNot Available
PubChem Compound447805
PDB IDNot Available
ChEBI ID160
References
General ReferencesNot Available

Enzymes

General function:
Involved in metabolic process
Specific function:
Iron sensor. Binds a 4Fe-4S cluster and functions as aconitase when cellular iron levels are high. Functions as mRNA binding protein that regulates uptake, sequestration and utilization of iron when cellular iron levels are low. Binds to iron-responsive elements (IRES) in target mRNA species when iron levels are low. Binding of a 4Fe-4S cluster precludes RNA binding. Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (By similarity).
Gene Name:
ACO1
Uniprot ID:
P21399
Molecular weight:
98398.14