<?xml version="1.0" encoding="UTF-8"?>
<compound>
  <version>1.0</version>
  <creation_date>2020-04-17 18:43:08 UTC</creation_date>
  <update_date>2020-12-07 19:11:06 UTC</update_date>
  <accession>CDB004849</accession>
  <secondary_accessions>
  </secondary_accessions>
  <name>D-2-Hydroxyglutaric acid</name>
  <description>D-2-Hydroxyglutaric acid, also known as (R)-hydroxyglutarate or (R)-2-hydroxy-pentanedioate, belongs to the class of organic compounds known as short-chain hydroxy acids and derivatives. These are hydroxy acids with an alkyl chain the contains less than 6 carbon atoms. D-2-Hydroxyglutaric acid is an extremely weak basic (essentially neutral) compound (based on its pKa). D-2-Hydroxyglutaric acid exists in all living organisms, ranging from bacteria to humans. D-2-hydroxyglutaric acid can be biosynthesized from oxoglutaric acid through the action of the enzyme D-2-hydroxyglutarate dehydrogenase, mitochondrial. In humans, D-2-hydroxyglutaric acid is involved in the metabolic disorder called the oncogenic action of d-2-hydroxyglutarate in hydroxyglutaric aciduria. Outside of the human body, D-2-Hydroxyglutaric acid has been detected, but not quantified in, milk (cow). This could make D-2-hydroxyglutaric acid a potential biomarker for the consumption of these foods. D-2-Hydroxyglutaric acid is a potentially toxic compound. D-2-Hydroxyglutaric acid, with regard to humans, has been found to be associated with several diseases such as d, l-2-hydroxyglutaric aciduria and spondyloenchondrodysplasia; D-2-hydroxyglutaric acid has also been linked to the inborn metabolic disorder d-2-hydroxyglutaric aciduria. The (R)-enantiomer of 2-hydroxyglutaric acid. D-2-Hydroxyglutaric acid is expected to be in Cannabis as all living plants are known to produce and metabolize it.</description>
  <synonyms>
    <synonym>(R)-2-Hydroxyglutarate</synonym>
    <synonym>(R)-Hydroxyglutarate</synonym>
    <synonym>(R)-2-Hydroxyglutaric acid</synonym>
    <synonym>(R)-Hydroxyglutaric acid</synonym>
    <synonym>D-2-Hydroxyglutarate</synonym>
    <synonym>(R)-2-Hydroxy-pentanedioate</synonym>
    <synonym>(R)-2-Hydroxy-pentanedioic acid</synonym>
    <synonym>(R)-a-Hydroxyglutarate</synonym>
    <synonym>(R)-a-Hydroxyglutaric acid</synonym>
    <synonym>(R)-alpha-Hydroxyglutarate</synonym>
    <synonym>(R)-alpha-Hydroxyglutaric acid</synonym>
    <synonym>2-Hydroxy-D-glutarate</synonym>
    <synonym>2-Hydroxy-D-glutaric acid</synonym>
    <synonym>2-Hydroxy-delta-glutarate</synonym>
    <synonym>2-Hydroxy-delta-glutaric acid</synonym>
    <synonym>D-a-Hydroxyglutarate</synonym>
    <synonym>D-a-Hydroxyglutaric acid</synonym>
    <synonym>delta-2-Hydroxyglutarate</synonym>
    <synonym>delta-2-Hydroxyglutaric acid</synonym>
    <synonym>delta-alpha-Hydroxyglutarate</synonym>
    <synonym>delta-alpha-Hydroxyglutaric acid</synonym>
    <synonym>2-Hydroxyglutarate</synonym>
    <synonym>alpha-Hydroxyglutarate, (D)-isomer</synonym>
    <synonym>alpha-Hydroxyglutarate, (DL)-isomer</synonym>
    <synonym>2-Hydroxyglutaric acid</synonym>
    <synonym>alpha-Hydroxyglutarate</synonym>
    <synonym>alpha-Hydroxyglutarate, (L)-isomer</synonym>
    <synonym>alpha-Hydroxyglutarate, disodium salt</synonym>
  </synonyms>
  <chemical_formula>C5H8O5</chemical_formula>
  <average_molecular_weight>148.11</average_molecular_weight>
  <monisotopic_molecular_weight>148.0372</monisotopic_molecular_weight>
  <iupac_name>(2R)-2-hydroxypentanedioic acid</iupac_name>
  <traditional_iupac>D-2-hydroxyglutaric acid</traditional_iupac>
  <cas_registry_number>13095-47-1</cas_registry_number>
  <smiles>O[C@H](CCC(O)=O)C(O)=O</smiles>
  <inchi>InChI=1S/C5H8O5/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/t3-/m1/s1</inchi>
  <inchikey>HWXBTNAVRSUOJR-GSVOUGTGSA-N</inchikey>
  <taxonomy>
    <description> belongs to the class of organic compounds known as short-chain hydroxy acids and derivatives. These are hydroxy acids with an alkyl chain the contains less than 6 carbon atoms.</description>
    <direct_parent>Short-chain hydroxy acids and derivatives</direct_parent>
    <kingdom>Organic compounds</kingdom>
    <super_class>Organic acids and derivatives</super_class>
    <class>Hydroxy acids and derivatives</class>
    <sub_class>Short-chain hydroxy acids and derivatives</sub_class>
    <molecular_framework>Aliphatic acyclic compounds</molecular_framework>
    <alternative_parents>
      <alternative_parent>Alpha hydroxy acids and derivatives</alternative_parent>
      <alternative_parent>Carbonyl compounds</alternative_parent>
      <alternative_parent>Carboxylic acids</alternative_parent>
      <alternative_parent>Dicarboxylic acids and derivatives</alternative_parent>
      <alternative_parent>Fatty acids and conjugates</alternative_parent>
      <alternative_parent>Hydrocarbon derivatives</alternative_parent>
      <alternative_parent>Monosaccharides</alternative_parent>
      <alternative_parent>Organic oxides</alternative_parent>
      <alternative_parent>Secondary alcohols</alternative_parent>
    </alternative_parents>
    <substituents>
      <substituent>Alcohol</substituent>
      <substituent>Aliphatic acyclic compound</substituent>
      <substituent>Alpha-hydroxy acid</substituent>
      <substituent>Carbonyl group</substituent>
      <substituent>Carboxylic acid</substituent>
      <substituent>Carboxylic acid derivative</substituent>
      <substituent>Dicarboxylic acid or derivatives</substituent>
      <substituent>Fatty acid</substituent>
      <substituent>Hydrocarbon derivative</substituent>
      <substituent>Monosaccharide</substituent>
      <substituent>Organic oxide</substituent>
      <substituent>Organic oxygen compound</substituent>
      <substituent>Organooxygen compound</substituent>
      <substituent>Secondary alcohol</substituent>
      <substituent>Short-chain hydroxy acid</substituent>
    </substituents>
    <external_descriptors>
      <external_descriptor>2-hydroxyglutaric acid</external_descriptor>
    </external_descriptors>
  </taxonomy>
  <experimental_properties>
    <property>
      <kind>melting_point</kind>
      <value>&gt; 300 °C</value>
      <source/>
    </property>
  </experimental_properties>
  <predicted_properties>
    <property>
      <kind>logp</kind>
      <value>-1.04</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logs</kind>
      <value>0.03</value>
      <source>ALOGPS</source>
    </property>
    <property>
      <kind>logp</kind>
      <value>-0.82</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>pka_strongest_acidic</kind>
      <value>3.28</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>pka_strongest_basic</kind>
      <value>-3.8</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>iupac</kind>
      <value>(2R)-2-hydroxypentanedioic acid</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>average_mass</kind>
      <value>148.11</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>mono_mass</kind>
      <value>148.0372</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>smiles</kind>
      <value>O[C@H](CCC(O)=O)C(O)=O</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>formula</kind>
      <value>C5H8O5</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>inchi</kind>
      <value>InChI=1S/C5H8O5/c6-3(5(9)10)1-2-4(7)8/h3,6H,1-2H2,(H,7,8)(H,9,10)/t3-/m1/s1</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>inchikey</kind>
      <value>HWXBTNAVRSUOJR-GSVOUGTGSA-N</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>polar_surface_area</kind>
      <value>94.83</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>refractivity</kind>
      <value>29.63</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>polarizability</kind>
      <value>12.97</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>rotatable_bond_count</kind>
      <value>4</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>acceptor_count</kind>
      <value>5</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>donor_count</kind>
      <value>3</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>physiological_charge</kind>
      <value>-2</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>formal_charge</kind>
      <value>0</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>number_of_rings</kind>
      <value>0</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>bioavailability</kind>
      <value>1</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>rule_of_five</kind>
      <value>Yes</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>ghose_filter</kind>
      <value>Yes</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>veber_rule</kind>
      <value>Yes</value>
      <source>ChemAxon</source>
    </property>
    <property>
      <kind>mddr_like_rule</kind>
      <value>Yes</value>
      <source>ChemAxon</source>
    </property>
  </predicted_properties>
  <kegg_id>C01087</kegg_id>
  <foodb_id>FDB022139</foodb_id>
  <chemspider_id>388508</chemspider_id>
  <pubchem_compound_id>439391</pubchem_compound_id>
  <pdb_id/>
  <chebi_id>32796</chebi_id>
  <drugbank_id/>
  <biocyc_id>R-2-HYDROXYGLUTARATE</biocyc_id>
  <phenol_explorer_compound_id/>
  <knapsack_id/>
  <bigg_id/>
  <wikipedia_id>Alpha-Hydroxyglutaric acid</wikipedia_id>
  <metlin_id>5581</metlin_id>
  <general_references>
  </general_references>
</compound>

